Obligatory courses for 2nd year Bioinformatics (course group defined by Faculty of Mathematics, Informatics, and Mechanics)

Faculty: Faculty of Mathematics, Informatics, and Mechanics

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Course group: Obligatory courses for 2nd year Bioinformatics

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2024Z - Winter semester 2024/25
2024L - Summer semester 2024/25
2025Z - Winter semester 2025/26
2025L - Summer semester 2025/26
(there could be semester, trimester or one-year classes)

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2024Z

2024L

2025Z

2025L

1000-712ASD

Faculty of Mathematics, Informatics, and Mechanics

Algorithms and data structures

Wydział Matematyki, Informatyki i Mechaniki

Algorytmy i struktury danych

n/a

Classes

Summer semester 2024/25

Classes - 15 hours
Lab - 15 hours
Lecture - 30 hours

Summer semester 2025/26

Classes - 15 hours
Lab - 15 hours
Lecture - 30 hours

Groups

- Obligatory courses for 2nd year Bioinformatics

Brief description

Algorithm design and analysis. Survey of fundamental algorithms and data structures. Improving practical programming and algorithm development skills. Applying ready to use libraries of algorithms and data structures.

Course page

1000-711BI1

Faculty of Mathematics, Informatics, and Mechanics

Introduction to bioinformatics 1

Wydział Matematyki, Informatyki i Mechaniki

Wstęp do bioinformatyki 1

n/a

Classes

Winter semester 2024/25

Lab - 45 hours
Lecture - 15 hours

Winter semester 2025/26

Lab - 45 hours
Lecture - 15 hours

Groups

- Obligatory courses for 2nd year Bioinformatics

Brief description

The lecture and the accompanying computer lab are intended for students of the second year of the macro-course "Bioinformatics and Systems Biology" and for the third year of "Molecular Design and Bioinformatics". They provide the basis for the application of computer science and computational science to the analysis of genes, genomes and proteins.

Course page

1000-714BI2

Faculty of Mathematics, Informatics, and Mechanics

Introduction to bioinformatics 2

Wydział Matematyki, Informatyki i Mechaniki

Wstęp do bioinformatyki 2

n/a

Classes

Summer semester 2024/25

Lab - 45 hours
Lecture - 15 hours

Groups

- Obligatory courses for 2nd year Bioinformatics

Brief description

The course focuses on bioinformatics techniques used to study proteins from an evolutionary perspective. It will cover essential tools (Linux, Python) and methods for protein structure and sequence analysis. The goal of the course is to provide practical skills for performing both high-throughput analyses aimed at the diversity and evolution of entire protein families, as well as in-depth analyses of individual proteins, particularly in the context of experimental research. The course is designed for individuals interested in expanding their knowledge of programming and biological data analysis.

Course page

1000-713BM1

Faculty of Mathematics, Informatics, and Mechanics

Molecular biology with genetics 1

Wydział Matematyki, Informatyki i Mechaniki

Biologia molekularna z genetyką 1

n/a

Classes

Winter semester 2024/25

Seminar - 30 hours
Lecture - 60 hours

Winter semester 2025/26

Seminar - 30 hours
Lecture - 60 hours

Groups

- Obligatory courses for 2nd year Bioinformatics

Brief description

In this course students become acquainted with the basic concepts and techniques of classical and molecular genetics, genomics, and genome evolution.

Course page

1000-714BM2

Faculty of Mathematics, Informatics, and Mechanics

Molecular biology with genetics 2

Wydział Matematyki, Informatyki i Mechaniki

Biologia molekularna z genetyką 2

n/a

Classes

Summer semester 2024/25

Classes - 30 hours
Lecture - 30 hours

Groups

- Obligatory courses for 2nd year Bioinformatics

Brief description

In this course students become acquainted with the basic concepts and techniques of eukaryotic genetics and human classical and molecular genetics and genomics.

Course page

1000-714bMPE

Faculty of Mathematics, Informatics, and Mechanics

Molecular fundamentals of enzymology

Wydział Matematyki, Informatyki i Mechaniki

Molekularne podstawy enzymologii

n/a

Classes

Summer semester 2024/25

Classes - 30 hours
Lecture - 15 hours

Groups

- Obligatory courses for 2nd year Bioinformatics

Brief description

During the lecture, students will learn about the structure of enzymatic proteins, the mechanisms of enzymatic catalysis, and enzymatic kinetics. The classes will present techniques and methods useful in working with enzymes in vitro and in silico.

Course page

1000-713PPO

Faculty of Mathematics, Informatics, and Mechanics

Object-oriented design and programming

Wydział Matematyki, Informatyki i Mechaniki

Programowanie i projektowanie obiektowe

n/a

Classes

Winter semester 2024/25

Lab - 30 hours
Lecture - 30 hours

Winter semester 2025/26

Lab - 30 hours
Lecture - 30 hours

Groups

- Obligatory courses for 2nd year Bioinformatics

Brief description

Introduction to object-oriented programming (in Java), introduction to object-oriented software design (with UML).

Course page

1000-715bOTG

Faculty of Mathematics, Informatics, and Mechanics

Optimization and game theory

Wydział Matematyki, Informatyki i Mechaniki

Optymalizacja i teoria gier

n/a

Classes

Winter semester 2024/25

Classes - 30 hours
Lecture - 30 hours

Winter semester 2025/26

Classes - 30 hours
Lecture - 30 hours

Groups

- Obligatory courses for 2nd year Bioinformatics

Brief description

The lecture encompasses optimization in multidimensional spaces and noncooperative game theory

Course page

1000-712bRPR

Faculty of Mathematics, Informatics, and Mechanics

Probability theory

Wydział Matematyki, Informatyki i Mechaniki

Rachunek prawdopodobieństwa

n/a

Classes

Winter semester 2024/25

Classes - 45 hours
Lecture - 30 hours

Winter semester 2025/26

Classes - 45 hours
Lecture - 30 hours

Groups

- Obligatory courses for 2nd year Bioinformatics

Brief description

The course is an introduction to the basic concepts and methods of the probability theory. The material includes the notion of probability, Kolmogorov’s axioms, conditional probability and independence, overview of basic discrete models of probability theory, basic discrete and continuous probability distributions, parameters of probability distributions, laws of large numbers, Central Limit Theorem, Markov chains, elements of information theory.

Course page

1000-714SAD

Faculty of Mathematics, Informatics, and Mechanics

Statistical data analysis

Wydział Matematyki, Informatyki i Mechaniki

Statystyczna analiza danych

n/a

Classes

Summer semester 2024/25

Classes - 15 hours
Lab - 30 hours
Lecture - 30 hours

Summer semester 2025/26

Classes - 15 hours
Lab - 30 hours
Lecture - 30 hours

Groups

- Obligatory courses for 2nd year Bioinformatics

- Obligatory courses for 3rd grade Mathematics

Brief description

Introduction to basic statistical notions and tools, such as parameter estimation and hypothesis testing. Introduction to data science, covering classification and clustering methods.

The Mathematics students can alternatively take the course

1000-116bST,

which has a different character.

Course page